U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC100841174 probable galacturonosyltransferase 4 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100841174, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100841174
    Gene description
    probable galacturonosyltransferase 4
    Locus tag
    BRADI_4g33280v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100841174 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (38904933..38908823)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (39087354..39091071)

    Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial Neighboring gene uncharacterized LOC104584694 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC100841685

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable galacturonosyltransferase 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      38904933..38908823
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003578250.4 → XP_003578298.1  probable galacturonosyltransferase 4

      UniProtKB/TrEMBL
      I1IR43
      Conserved Domains (2) summary
      cd06429
      Location:389 → 683
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
      PLN02829
      Location:68 → 696
      PLN02829; Probable galacturonosyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases