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    LOC21402940 WRKY transcription factor 1 [ Morus notabilis ]

    Gene ID: 21402940, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC21402940
    Gene description
    WRKY transcription factor 1
    Locus tag
    L484_020026
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Morus notabilis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Moreae; Morus
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    Genomic context

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    See LOC21402940 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ASM41409v2 (GCF_000414095.1) Unplaced Scaffold NW_010368056.1 (348330..352193, complement)

    NW_010368056.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112094714 Neighboring gene scarecrow-like transcription factor PAT1 Neighboring gene splicing factor ESS-2 homolog Neighboring gene probable serine/threonine-protein kinase WNK11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010368056 Unplaced Scaffold Reference ASM41409v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Morus notabilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM41409v2

    Genomic

    1. NW_010368056.1 Reference ASM41409v2

      Range
      348330..352193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010114493.2 → XP_010112795.2  WRKY transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      W9SZV2
      Conserved Domains (1) summary
      pfam03106
      Location:212 → 267
      WRKY; WRKY DNA -binding domain

    2. XM_024176318.1 → XP_024032086.1  WRKY transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      W9SZV2
      Conserved Domains (1) summary
      pfam03106
      Location:229 → 284
      WRKY; WRKY DNA -binding domain

    3. XM_024176320.1 → XP_024032088.1  WRKY transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      W9SZV2
      Conserved Domains (1) summary
      pfam03106
      Location:229 → 284
      WRKY; WRKY DNA -binding domain

    4. XM_024176319.1 → XP_024032087.1  WRKY transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      W9SZV2
      Conserved Domains (1) summary
      pfam03106
      Location:229 → 284
      WRKY; WRKY DNA -binding domain
    Nucleotide Protein
    Heading Accession and Version

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