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    LOC111832671 albumin (ALB) 5' regulatory region [ Homo sapiens (human) ]

    Gene ID: 111832671, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC111832671
    Gene description
    albumin (ALB) 5' regulatory region
    Gene type
    biological region
    Feature type(s)
    protein_bind
    regulatory: TATA_box, enhancer, promoter
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This region represents the promoter and associated upstream enhancers of the albumin (ALB) gene, which is relevant for COVID-19 prognosis. Activity of this region is stimulated by binding by HNF1 homeobox A and CCAAT/enhancer-binding protein, and is negatively regulated by tumor protein p53. An enhancer in this region may also regulate activity of the alpha fetoprotein promoter located approximately 30 kb downstream. [provided by RefSeq, Jun 2021]
    Annotation information
    Note: This locus has been reviewed for its involvement in coronavirus biology, and is involved in host gene regulation.
    Orthologs
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    Genomic context

    See LOC111832671 in Genome Data Viewer
    Location:
    4q13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (73397685..73404342)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (76741387..76748044)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (74263402..74270059)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 17 Neighboring gene uncharacterized LOC124900713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:74121667-74122167 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15476 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:74124568-74125164 Neighboring gene small nucleolar RNA SNORA3/SNORA45 family Neighboring gene ANKRD17 divergent transcript Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:74191462-74192661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:74205305-74205804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:74204803-74205304 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:74209023-74209524 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:74235125-74235832 Neighboring gene alpha fetoprotein (AFP) 5' regulatory region Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:74315627-74316826 Neighboring gene albumin Neighboring gene alpha fetoprotein Neighboring gene NANOG hESC enhancer GRCh37_chr4:74360223-74360724 Neighboring gene afamin

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_056261.1 

      Range
      101..6758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      73397685..73404342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      76741387..76748044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)