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    GTF2IRD1 GTF2I repeat domain containing 1 [ Equus caballus (horse) ]

    Gene ID: 100062277, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GTF2IRD1provided by VGNC
    Official Full Name
    GTF2I repeat domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:18642
    See related
    Ensembl:ENSECAG00000019745
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See GTF2IRD1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (12205083..12315484)

    Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene CAP-Gly domain containing linker protein 2 Neighboring gene RWD domain-containing protein 1 pseudogene Neighboring gene uncharacterized LOC106781525 Neighboring gene translation initiation factor IF-2 Neighboring gene general transcription factor IIi

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor II-I repeat domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009156.3 Reference EquCab3.0 Primary Assembly

      Range
      12205083..12315484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023655493.1 → XP_023511261.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    2. XM_023655489.1 → XP_023511257.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    3. XM_023655487.1 → XP_023511255.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Related
      ENSECAP00000043207.2, ENSECAT00000052138.2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    4. XM_023655491.1 → XP_023511259.1  general transcription factor II-I repeat domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Related
      ENSECAP00000087817.1, ENSECAT00000108777.1
      Conserved Domains (1) summary
      pfam02946
      Location:771 → 843
      GTF2I; GTF2I-like repeat

    5. XM_023655494.1 → XP_023511262.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    6. XM_023655488.1 → XP_023511256.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    7. XM_023655490.1 → XP_023511258.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    8. XM_023655492.1 → XP_023511260.1  general transcription factor II-I repeat domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:768 → 840
      GTF2I; GTF2I-like repeat

    9. XM_023655495.1 → XP_023511263.1  general transcription factor II-I repeat domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A9L0SL08
      Conserved Domains (1) summary
      pfam02946
      Location:690 → 762
      GTF2I; GTF2I-like repeat
    Nucleotide Protein
    Heading Accession and Version

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