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    pglyrp6 peptidoglycan recognition protein 6 [ Cyprinus carpio (common carp) ]

    Gene ID: 109047438, updated on 14-Mar-2024

    Summary

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    Gene symbol
    pglyrp6
    Gene description
    peptidoglycan recognition protein 6
    See related
    Ensembl:ENSCCRG00000020355
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
    Also known as
    pgrp6
    Orthologs
    zebrafish all
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    Genomic context

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    See pglyrp6 in Genome Data Viewer
    Location:
    chromosome: B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) B3 NC_056599.1 (11395080..11399962, complement)
    100 previous assembly common carp genome (GCF_000951615.1) 44 NC_031740.1 (48977..53552)

    Chromosome B3 - NC_056599.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E2 receptor EP1 subtype-like Neighboring gene protein Wiz-like Neighboring gene hsp70-binding protein 1-like Neighboring gene B-cell receptor CD22-like Neighboring gene uncharacterized LOC122136482 Neighboring gene elongation factor Tu, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetylmuramoyl-L-alanine amidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidoglycan binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidoglycan immune receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in detection of bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidoglycan recognition protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056599.1 Reference ASM1834038v1 Primary Assembly

      Range
      11395080..11399962 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042719670.1 → XP_042575604.1  peptidoglycan recognition protein 6

      UniProtKB/TrEMBL
      A0A8C1BW26, A0A8C1J111, A0A9Q9ZVL2, A0A9R1SEM7
      Conserved Domains (1) summary
      smart00701
      Location:290 → 432
      PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme
    Nucleotide Protein
    Heading Accession and Version

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