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    znf687b zinc finger protein 687b [ Seriola dumerili (greater amberjack) ]

    Gene ID: 111223542, updated on 15-Mar-2024

    Summary

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    Gene symbol
    znf687b
    Gene description
    zinc finger protein 687b
    See related
    Ensembl:ENSSDUG00000017625
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola dumerili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Orthologs
    human zebrafish all
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    Genomic context

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    See znf687b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174365.1 (9275945..9284347)

    NW_019174365.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase type-1 alpha-like Neighboring gene 26S proteasome non-ATPase regulatory subunit 4 Neighboring gene aquaporin 10b Neighboring gene HCLS1 associated protein X-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019174365 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger protein 687b-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sdu_1.0 Primary Assembly

    Genomic

    1. NW_019174365.1 Reference Sdu_1.0 Primary Assembly

      Range
      9275945..9284347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022747733.1 → XP_022603454.1  zinc finger protein 687b-like isoform X1

      UniProtKB/TrEMBL
      A0A3B4V2C0
      Related
      ENSSDUP00000024240.1, ENSSDUT00000024695.1
      Conserved Domains (4) summary
      sd00017
      Location:1148 → 1168
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1340 → 1378
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16622
      Location:1334 → 1362
      zf-C2H2_11; zinc-finger C2H2-type
      cl28033
      Location:6 → 409
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    2. XM_022747735.1 → XP_022603456.1  zinc finger protein 687b-like isoform X2

      Conserved Domains (4) summary
      sd00017
      Location:1137 → 1157
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1329 → 1367
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16622
      Location:1323 → 1351
      zf-C2H2_11; zinc-finger C2H2-type
      cl28033
      Location:6 → 406
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    3. XM_022747734.1 → XP_022603455.1  zinc finger protein 687b-like isoform X1

      UniProtKB/TrEMBL
      A0A3B4V2C0
      Conserved Domains (4) summary
      sd00017
      Location:1148 → 1168
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1340 → 1378
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam16622
      Location:1334 → 1362
      zf-C2H2_11; zinc-finger C2H2-type
      cl28033
      Location:6 → 409
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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