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    wasf1 WASP family member 1 [ Seriola dumerili (greater amberjack) ]

    Gene ID: 111239134, updated on 15-Mar-2024

    Summary

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    Gene symbol
    wasf1
    Gene description
    WASP family member 1
    See related
    Ensembl:ENSSDUG00000017280
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola dumerili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Orthologs
    human zebrafish all
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    Genomic context

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    See wasf1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174280.1 (13340641..13397156, complement)

    NW_019174280.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 167 Neighboring gene kinesin family member 25 Neighboring gene cell division cycle 40 homolog (S. cerevisiae) Neighboring gene methyltransferase like 24

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019174280 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Arp2/3 complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase A regulatory subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    wiskott-Aldrich syndrome protein family member 1
    Names
    WAS protein family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sdu_1.0 Primary Assembly

    Genomic

    1. NW_019174280.1 Reference Sdu_1.0 Primary Assembly

      Range
      13340641..13397156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022768944.1 → XP_022624665.1  wiskott-Aldrich syndrome protein family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A3B4UZ21, A0A3B4UZ47
      Related
      ENSSDUP00000023788.1, ENSSDUT00000024232.1
      Conserved Domains (1) summary
      pfam02205
      Location:491 → 518
      WH2; WH2 motif

    2. XM_022768953.1 → XP_022624674.1  wiskott-Aldrich syndrome protein family member 1 isoform X2

      UniProtKB/TrEMBL
      A0A3B4UZ47
      Conserved Domains (1) summary
      pfam02205
      Location:431 → 458
      WH2; WH2 motif

    3. XM_022768936.1 → XP_022624657.1  wiskott-Aldrich syndrome protein family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A3B4UZ21, A0A3B4UZ47
      Conserved Domains (1) summary
      pfam02205
      Location:491 → 518
      WH2; WH2 motif
    Nucleotide Protein
    Heading Accession and Version

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