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    LOC100535636 protein shisa-8 [ Danio rerio (zebrafish) ]

    Gene ID: 100535636, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC100535636
    Gene description
    protein shisa-8
    See related
    Ensembl:ENSDARG00000105972
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100535636 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (24790512..24909264, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (24660996..24778695, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 17 Neighboring gene myocardin related transcription factor Aa Neighboring gene desumoylating isopeptidase 1a Neighboring gene chromobox homolog 7a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein shisa-8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      24790512..24909264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354765.3 → XP_017210254.1  protein shisa-8 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z526

    2. XM_009299406.4 → XP_009297681.1  protein shisa-8 isoform X1

      UniProtKB/TrEMBL
      A0A286Y8J8, A0A8M3B887
      Related
      ENSDARP00000143491.1, ENSDART00000178321.2
      Conserved Domains (1) summary
      pfam13908
      Location:64 → 243
      Shisa; Wnt and FGF inhibitory regulator

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394532.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      265610..375394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471424.2 → XP_021327099.1  protein shisa-8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PQD6
      Conserved Domains (1) summary
      pfam13908
      Location:64 → 186
      Shisa; Wnt and FGF inhibitory regulator

    2. XM_021471423.2 → XP_021327098.1  protein shisa-8 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PJE6
      Conserved Domains (1) summary
      pfam13908
      Location:64 → 243
      Shisa; Wnt and FGF inhibitory regulator
    Nucleotide Protein Strain
    Heading Accession and Version

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