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    Bpifc BPI fold containing family C [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101699911, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Bpifc
    Gene description
    BPI fold containing family C
    Locus tag
    GW7_07162
    See related
    Ensembl:ENSHGLG00000004370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Bpifc in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624750.1 (1997493..2043910)

    NW_004624750.1Genomic Context describing neighboring genes Neighboring gene synapsin III Neighboring gene uncharacterized LOC106009407 Neighboring gene F-box protein 7 Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene PR/SET domain 4 Neighboring gene PWP1 homolog, endonuclein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624750 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BPI fold-containing family C protein
    Names
    Bactericidal/permeability-increasing protein-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624750.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      1997493..2043910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021258349.1 → XP_021114008.1  BPI fold-containing family C protein isoform X2

      Conserved Domains (2) summary
      pfam01273
      Location:41 → 208
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:245 → 482
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    2. XM_021258348.1 → XP_021114007.1  BPI fold-containing family C protein isoform X2

      Conserved Domains (2) summary
      pfam01273
      Location:41 → 208
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:245 → 482
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    3. XM_021258350.1 → XP_021114009.1  BPI fold-containing family C protein isoform X2

      Conserved Domains (2) summary
      pfam01273
      Location:41 → 208
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:245 → 482
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    4. XM_021258347.1 → XP_021114006.1  BPI fold-containing family C protein isoform X2

      Conserved Domains (2) summary
      pfam01273
      Location:41 → 208
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:245 → 482
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    5. XM_021258354.1 → XP_021114013.1  BPI fold-containing family C protein isoform X4

      Conserved Domains (2) summary
      pfam01273
      Location:29 → 154
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:191 → 428
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    6. XM_021258351.1 → XP_021114010.1  BPI fold-containing family C protein isoform X3

      UniProtKB/TrEMBL
      G5BPE2
      Conserved Domains (2) summary
      pfam01273
      Location:34 → 201
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:238 → 475
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    7. XM_021258353.1 → XP_021114012.1  BPI fold-containing family C protein isoform X4

      Conserved Domains (2) summary
      pfam01273
      Location:29 → 154
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:191 → 428
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    8. XM_021258352.1 → XP_021114011.1  BPI fold-containing family C protein isoform X3

      UniProtKB/TrEMBL
      G5BPE2
      Conserved Domains (2) summary
      pfam01273
      Location:34 → 201
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:238 → 475
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    9. XM_021258355.1 → XP_021114014.1  BPI fold-containing family C protein isoform X4

      Conserved Domains (2) summary
      pfam01273
      Location:29 → 154
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:191 → 428
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    10. XM_004845066.2 → XP_004845123.1  BPI fold-containing family C protein isoform X3

      See identical proteins and their annotated locations for XP_004845123.1

      UniProtKB/TrEMBL
      G5BPE2
      Related
      ENSHGLP00000005978.1, ENSHGLT00000006052.1
      Conserved Domains (2) summary
      pfam01273
      Location:34 → 201
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:238 → 475
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    11. XM_021258356.1 → XP_021114015.1  BPI fold-containing family C protein isoform X4

      Conserved Domains (2) summary
      pfam01273
      Location:29 → 154
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:191 → 428
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    12. XM_021258357.1 → XP_021114016.1  BPI fold-containing family C protein isoform X5

      Conserved Domains (2) summary
      pfam01273
      Location:45 → 212
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:249 → 415
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    13. XM_021258358.1 → XP_021114017.1  BPI fold-containing family C protein isoform X5

      Conserved Domains (2) summary
      pfam01273
      Location:45 → 212
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:249 → 415
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    14. XM_021258346.1 → XP_021114005.1  BPI fold-containing family C protein isoform X1

      Conserved Domains (2) summary
      pfam01273
      Location:45 → 212
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
      cl00188
      Location:249 → 486
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...
    Nucleotide Protein
    Heading Accession and Version

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