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    SLC39A5 solute carrier family 39 member 5 [ Sus scrofa (pig) ]

    Gene ID: 100155542, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC39A5provided by VGNC
    Official Full Name
    solute carrier family 39 member 5provided by VGNC
    Primary source
    VGNC:VGNC:93106
    See related
    Ensembl:ENSSSCG00000000385
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in liver (RPKM 31.1), mixtures (RPKM 14.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SLC39A5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (21631874..21640476)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (23030339..23036253, complement)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene ring finger protein 41 Neighboring gene nucleic acid binding protein 2 Neighboring gene ankyrin repeat domain 52 Neighboring gene coenzyme Q10A Neighboring gene citrate synthase Neighboring gene canopy FGF signaling regulator 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular zinc ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in zinc ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc transporter ZIP5
    Names
    solute carrier family 39 (metal ion transporter), member 5
    solute carrier family 39 (zinc transporter), member 5

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      21631874..21640476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005655608.3 → XP_005655665.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655665.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Related
      ENSSSCP00000044361.2, ENSSSCT00000046133.3
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    2. XM_005655613.3 → XP_005655670.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655670.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    3. XM_005655607.3 → XP_005655664.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655664.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    4. XM_013988303.2 → XP_013843757.1  zinc transporter ZIP5

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Related
      ENSSSCP00000080997.1, ENSSSCT00000103517.1
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    5. XM_005655612.3 → XP_005655669.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655669.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    6. XM_001927701.5 → XP_001927736.2  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_001927736.2

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Related
      ENSSSCP00000043904.2, ENSSSCT00000037549.3
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    7. XM_005655609.3 → XP_005655666.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655666.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    8. XM_021092859.1 → XP_020948518.1  zinc transporter ZIP5

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    9. XM_003126265.4 → XP_003126313.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_003126313.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Related
      ENSSSCP00000000407.4, ENSSSCT00000000413.4
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    10. XM_021092860.1 → XP_020948519.1  zinc transporter ZIP5

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    11. XM_005655614.3 → XP_005655671.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655671.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter

    12. XM_005655611.3 → XP_005655668.1  zinc transporter ZIP5

      See identical proteins and their annotated locations for XP_005655668.1

      UniProtKB/TrEMBL
      A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
      Conserved Domains (1) summary
      pfam02535
      Location:242 → 505
      Zip; ZIP Zinc transporter
    Nucleotide Protein
    Heading Accession and Version

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