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    LOC107612481 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Arachis ipaensis ]

    Gene ID: 107612481, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107612481
    Gene description
    cellulose synthase A catalytic subunit 3 [UDP-forming]
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arachis ipaensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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    Genomic context

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    See LOC107612481 in Genome Data Viewer
    Location:
    chromosome: B08
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current Araip1.1 (GCF_000816755.2) B08 NC_029792.2 (119790943..119802809)
    100 previous assembly Araip1.0 (GCF_000816755.1) B08 NC_029792.1 (117833530..117845410, complement)

    Chromosome B08 - NC_029792.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g64816 Neighboring gene protein FRA10AC1 Neighboring gene senescence-associated carboxylesterase 101 Neighboring gene phosphoribosylamine--glycine ligase, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase A catalytic subunit 3 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Araip1.1

    Genomic

    1. NC_029792.2 Reference Araip1.1

      Range
      119790943..119802809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021109872.1 → XP_020965531.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    2. XM_021109873.1 → XP_020965532.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    3. XM_016314170.2 → XP_016169656.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    4. XM_021109870.1 → XP_020965529.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    5. XM_021109871.1 → XP_020965530.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    6. XM_021109877.1 → XP_020965536.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    7. XM_021109878.1 → XP_020965537.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    8. XM_021109874.1 → XP_020965533.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    9. XM_021109875.1 → XP_020965534.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

    10. XM_021109876.1 → XP_020965535.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

      Conserved Domains (1) summary
      PLN02638
      Location:1 → 1066
      PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
    Nucleotide Protein
    Heading Accession and Version

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