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    LOC110121032 VISTA enhancer hs1220 [ Homo sapiens (human) ]

    Gene ID: 110121032, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC110121032
    Gene description
    VISTA enhancer hs1220
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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    Genomic context

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    Location:
    chromosome: 6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (97764453..97766825)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (98938360..98940722)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (98212329..98214701)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927314 Neighboring gene uncharacterized LOC105377909 Neighboring gene VISTA enhancer hs1564 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:97972665-97973270 Neighboring gene uncharacterized LOC107986627 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98039517-98040026 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98040027-98040534 Neighboring gene VISTA enhancer hs1035 Neighboring gene VISTA enhancer hs282 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:98229515-98230289 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98228738-98229514 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98227185-98227961 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98232017-98232808 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98232809-98233600 Neighboring gene NANOG hESC enhancer GRCh37_chr6:98260745-98261246 Neighboring gene VISTA enhancer hs567 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98487053-98487850 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98487851-98488648 Neighboring gene VISTA enhancer hs563 Neighboring gene VISTA enhancer hs1233 Neighboring gene microRNA 2113 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:98536551-98537051 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:98564097-98564598 Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_053653.1 

      Range
      101..2473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      97764453..97766825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      98938360..98940722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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