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    LOC105156966 TVP38/TMEM64 family membrane protein slr0305 [ Sesamum indicum (sesame) ]

    Gene ID: 105156966, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105156966
    Gene description
    TVP38/TMEM64 family membrane protein slr0305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105156966 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    10
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (1381806..1386409)

    Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene UPF0613 protein PB24D3.06c Neighboring gene uncharacterized LOC105156965 Neighboring gene heavy metal-associated isoprenylated plant protein 33-like Neighboring gene stem-specific protein TSJT1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
    2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC105156966

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      1381806..1386409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011073241.2 → XP_011071543.1  uncharacterized protein LOC105156966 isoform X2

      See identical proteins and their annotated locations for XP_011071543.1

      UniProtKB/TrEMBL
      A0A6I9SPE5
      Conserved Domains (1) summary
      COG0398
      Location:15 → 137
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]

    2. XM_011073237.2 → XP_011071539.1  uncharacterized protein LOC105156966 isoform X1

      UniProtKB/TrEMBL
      A0A6I9SVQ5
      Conserved Domains (1) summary
      COG0398
      Location:39 → 190
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]

    3. XM_020693074.1 → XP_020548733.1  uncharacterized protein LOC105156966 isoform X2

      UniProtKB/TrEMBL
      A0A6I9SPE5
      Conserved Domains (1) summary
      COG0398
      Location:15 → 137
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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