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    LOC105159353 receptor protein kinase CLAVATA1-like [ Sesamum indicum (sesame) ]

    Gene ID: 105159353, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105159353
    Gene description
    receptor protein kinase CLAVATA1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105159353 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    2
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (23696815..23700225, complement)

    Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase CIP8 Neighboring gene uncharacterized LOC105159352 Neighboring gene synaptotagmin-2 Neighboring gene DNA-directed RNA polymerase I subunit RPA12-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables receptor serine/threonine kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor protein kinase CLAVATA1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      23696815..23700225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011076391.2 → XP_011074693.1  receptor protein kinase CLAVATA1-like

      UniProtKB/TrEMBL
      A0A6I9SVR5
      Conserved Domains (4) summary
      PLN00113
      Location:59 → 974
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd00116
      Location:196 → 459
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:338 → 358
      LRR_RI; leucine-rich repeat [structural motif]
      cl21453
      Location:694 → 966
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
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