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    LOC105157140 two-component response regulator ARR5 [ Sesamum indicum (sesame) ]

    Gene ID: 105157140, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105157140
    Gene description
    two-component response regulator ARR5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105157140 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    6
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (3267490..3270107)

    Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105157138 Neighboring gene probable ATP-dependent RNA helicase DDX46 Neighboring gene formin-like protein 4 Neighboring gene gamma-glutamyltranspeptidase 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator ARR5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      3267490..3270107
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011073450.2 → XP_011071752.1  two-component response regulator ARR5

      UniProtKB/TrEMBL
      A0A6I9SP25
      Conserved Domains (1) summary
      cd00156
      Location:19 → 143
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

    RNA

    1. XR_847422.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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