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    PLEC plectin [ Nanorana parkeri ]

    Gene ID: 108791975, updated on 14-Mar-2024

    Summary

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    Gene symbol
    PLEC
    Gene description
    plectin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nanorana parkeri
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Dicroglossidae; Dicroglossinae; Nanorana
    Orthologs
    human mouse all
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    Genomic context

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    See PLEC in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    100 current ASM93562v1 (GCF_000935625.1) Unplaced Scaffold NW_017306856.1 (174139..399154, complement)

    NW_017306856.1Genomic Context describing neighboring genes Neighboring gene gonadotropin-releasing hormone II receptor-like Neighboring gene poly(ADP-ribose) polymerase family member 16 Neighboring gene uncharacterized LOC108791971 Neighboring gene uncharacterized LOC108791977 Neighboring gene alanine aminotransferase 2-like Neighboring gene alanine aminotransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017306856.1 Unplaced Scaffold Reference ASM93562v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables keratin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intermediate filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wound healing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plectin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nanorana parkeri Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM93562v1 Primary Assembly

    Genomic

    1. NW_017306856.1 Reference ASM93562v1 Primary Assembly

      Range
      174139..399154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018562625.1 → XP_018418127.1  plectin isoform X1

    2. XM_018562626.1 → XP_018418128.1  plectin isoform X2

    3. XM_018562629.1 → XP_018418131.1  plectin isoform X4

    4. XM_018562628.1 → XP_018418130.1  plectin isoform X3

    Nucleotide Protein
    Heading Accession and Version

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