U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC18604882 agamous-like MADS-box protein AGL8 homolog [ Theobroma cacao (cacao) ]

    Gene ID: 18604882, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC18604882
    Gene description
    agamous-like MADS-box protein AGL8 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC18604882 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 3 NC_030852.1 (24084494..24102570)

    Chromosome 3 - NC_030852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108661258 Neighboring gene uncharacterized LOC108661257 Neighboring gene uncharacterized LOC108661294 Neighboring gene uncharacterized LOC108661231 Neighboring gene uncharacterized LOC18604885

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_030852.1 Chromosome 3 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    agamous-like MADS-box protein AGL8 homolog; truncated transcription factor CAULIFLOWER A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030852.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      24084494..24102570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018118462.1 → XP_017973951.1  agamous-like MADS-box protein AGL8 homolog isoform X3

      UniProtKB/TrEMBL
      A0A061FX88

    2. XM_018118461.1 → XP_017973950.1  truncated transcription factor CAULIFLOWER A isoform X1

      UniProtKB/TrEMBL
      A0A061FX88

    3. XM_007037572.2 → XP_007037634.2  truncated transcription factor CAULIFLOWER A isoform X2

      UniProtKB/TrEMBL
      A0A061FX88
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases