U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    SPSK_00137 splicing factor 3B subunit 4 [ Sporothrix schenckii 1099-18 ]

    Gene ID: 27662394, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SPSK_00137
    Gene description
    splicing factor 3B subunit 4
    Locus tag
    SPSK_00137
    See related
    FungiDB:SPSK_00137; VEuPathDB:SPSK_00137
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sporothrix schenckii 1099-18 (strain: 1099-18, nat-host: Homo sapiens, culture-collection: ATCC:MYA-4821)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Sporothrix
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SPSK_00137 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_015971147.1Genomic Context describing neighboring genes Neighboring gene geranylgeranyl transferase type-2 subunit beta Neighboring gene RhoGAP group protein Neighboring gene uncharacterized protein Neighboring gene solute carrier family 25 (mitochondrial folate transporter), member 32

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_015971147.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis. Teixeira Mde M, et al. Eukaryot Cell, 2015 Feb. PMID 25480940, Free PMC Article
    2. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. Teixeira MM, et al. BMC Genomics, 2014 Oct 29. PMID 25351875, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    splicing factor 3B subunit 4
    XP_016586412.1
    • identified by sequence similarity

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_015971147.1 Reference assembly

      Range
      247625..248908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016727117.1 → XP_016586412.1  splicing factor 3B subunit 4 [Sporothrix schenckii 1099-18]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0F2M6C7, U7PLU2
      Conserved Domains (2) summary
      cd12334
      Location:14 → 87
      RRM1_SF3B4; RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
      cd12335
      Location:99 → 180
      RRM2_SF3B4; RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases