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    RHTO_06477 leucine-trna ligase [ Rhodotorula toruloides NP11 ]

    Gene ID: 27370490, updated on 3-Jan-2024

    Summary

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    Gene symbol
    RHTO_06477
    Gene description
    leucine-trna ligase
    Locus tag
    RHTO_06477
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rhodotorula toruloides NP11 (strain: NP11)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Microbotryomycetes; Sporidiobolales; Sporidiobolaceae; Rhodotorula
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    Genomic context

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    See RHTO_06477 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    6

    NW_015623001.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene choline transporter Neighboring gene uncharacterized protein Neighboring gene DUF3140 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015623001.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides. Zhu Z, et al. Nat Commun, 2012. PMID 23047670, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables leucine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leucyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-trna ligase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_015623001.1 Reference assembly

      Range
      66110..69868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016420138.1 → XP_016269453.1  leucine-trna ligase [Rhodotorula toruloides NP11]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A061BE33, A0A0K3CMW6, G0SVY7, M7X3V9
      Conserved Domains (4) summary
      cd07959
      Location:800 → 922
      Anticodon_Ia_Leu_AEc; Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases
      cd00812
      Location:572 → 802
      LeuRS_core; catalytic core domain of leucyl-tRNA synthetases
      PLN02959
      Location:22 → 1116
      PLN02959; aminoacyl-tRNA ligase
      cl00015
      Location:77 → 245
      nt_trans; nucleotidyl transferase superfamily
    Nucleotide Protein
    Heading Accession and Version

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