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    LINC02211 long intergenic non-protein coding RNA 2211 [ Homo sapiens (human) ]

    Gene ID: 105374693, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02211provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2211provided by HGNC
    Primary source
    HGNC:HGNC:53078
    See related
    AllianceGenome:HGNC:53078
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02211 in Genome Data Viewer
    Location:
    5p14.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (25190953..25302280)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (25296121..25407454)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (25191062..25302389)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2239 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:24985574-24985753 Neighboring gene Sharpr-MPRA regulatory region 953 Neighboring gene 5p14.1 distal LINE-mediated recombination region Neighboring gene long intergenic non-protein coding RNA 2228 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:25190769-25191268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:25330102-25330602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:25330603-25331103 Neighboring gene 5p14.1 proximal LINE-mediated recombination region Neighboring gene NANOG hESC enhancer GRCh37_chr5:25441975-25442639 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:25445439-25446078 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:25446079-25446718 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:25448018-25448856 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:25500627-25501143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:25567928-25568436 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:25568437-25568943 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:25568944-25569451 Neighboring gene uncharacterized LOC124901175 Neighboring gene NANOG hESC enhancer GRCh37_chr5:25570127-25570673 Neighboring gene RNA, U6 small nuclear 374, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136209.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099499, AC106754

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      25190953..25302280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      25296121..25407454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)