Gm12250 predicted gene 12250 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Gm12250provided by MGI
Official Full Name: predicted gene 12250provided by MGI
Primary source: MGI:MGI:3649299
See related: AllianceGenome:MGI:3649299
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Irgb10
Summary: Enables G protein activity and membrane destabilizing activity. Involved in several processes, including defense response to other organism; positive regulation of defense response; and protein homooligomerization. Acts upstream of or within response to bacterium. Is active in symbiont cell surface. [provided by Alliance of Genome Resources, Oct 2024]
Expression: Broad expression in large intestine adult (RPKM 2.7), spleen adult (RPKM 1.5) and 20 other tissues See more
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Genomic context

Location:: 11 B1.3; 11 35.96 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	11	NC_000077.7 (58074669..58081024)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	11	NC_000077.6 (58183843..58190198)

Chromosome 11 - NC_000077.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The IFN-inducible GTPase IRGB10 regulates viral replication and inflammasome activation during influenza A virus infection in mice.
Title: The IFN-inducible GTPase IRGB10 regulates viral replication and inflammasome activation during influenza A virus infection in mice.
Molecular basis of IRGB10 oligomerization and membrane association for pathogen membrane disruption.
Title: Molecular basis of IRGB10 oligomerization and membrane association for pathogen membrane disruption.
During Aspergillus fumigatus infection, GTP phosphohydrolases (Irgb10) expression is induced by interferon regulatory factor-1. Irgb10 targets the fungal cell wall, and the antifungal activity of IRGB10 causes hyphae damage, modifies the A. fumigatus surface and inhibits fungal growth. beta-glucan, a pathogen-associated molecular pattern molecules, directly triggers inflammasome assembly.
Title: Fungal ligands released by innate immune effectors promote inflammasome activation during Aspergillus fumigatus infection.
these results reveal IRGB10 as part of a conserved signaling hub at the interface between cell-autonomous immunity and innate immune sensing pathways.
Title: IRGB10 Liberates Bacterial Ligands for Sensing by the AIM2 and Caspase-11-NLRP3 Inflammasomes.
C. muridarum has evolved a mechanism to escape the murine IFN-gamma response by restricting access of Irgb10 and possibly other IRG proteins to the inclusion.
Title: Chlamydia muridarum evades growth restriction by the IFN-gamma-inducible host resistance factor Irgb10.
p47 GTPases Irgb10 and Iigp2 act together to confer differential susceptibility against murine chlamydial infection.
Title: The p47 GTPases Iigp2 and Irgb10 regulate innate immunity and inflammation to murine Chlamydia psittaci infection.
Data use fine structure mapping in congenic fibroblasts carrying DNA from the susceptible parent to localize the effect of Ctrq-3 to a 1.2-megabase interval of genomic DNA that contains Irgb10 and Igtp.
Title: The p47 GTPases Igtp and Irgb10 map to the Chlamydia trachomatis susceptibility locus Ctrq-3 and mediate cellular resistance in mice.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1) 1 citation

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables G protein activity	IDA Inferred from Direct Assay more info	PubMed
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables membrane destabilizing activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in defense response to bacterium	IDA Inferred from Direct Assay more info	PubMed
involved_in defense response to fungus	IDA Inferred from Direct Assay more info	PubMed
involved_in defense response to protozoan	IDA Inferred from Direct Assay more info	PubMed
involved_in defense response to virus	IDA Inferred from Direct Assay more info	PubMed
involved_in disruption of plasma membrane integrity in another organism	IDA Inferred from Direct Assay more info	PubMed
involved_in innate immune response	IEA Inferred from Electronic Annotation more info
involved_in killing of cells of another organism	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of AIM2 inflammasome complex assembly	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of NLRP3 inflammasome complex assembly	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of pyroptotic inflammatory response	IDA Inferred from Direct Assay more info	PubMed
involved_in protein homooligomerization	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within response to bacterium	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasmic vesicle membrane	IEA Inferred from Electronic Annotation more info
is_active_in symbiont cell surface	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: interferon-gamma-inducible GTPase 10

Names: interferon-gamma-inducible p47 GTPase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001135115.1 → NP_001128587.1 interferon-gamma-inducible GTPase 10

See identical proteins and their annotated locations for NP_001128587.1

Status: PROVISIONAL

Source sequence(s)

AL928857

UniProtKB/Swiss-Prot

Q0GUM2, Q0GUM3

UniProtKB/TrEMBL

U5NFV2

Conserved Domains (2) summary

cd04104
Location:68 → 263

p47_IIGP_like; p47 GTPase family includes IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1

pfam05049
Location:34 → 407

IIGP; Interferon-inducible GTPase (IIGP)