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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001040441.3 → NP_001035531.2 zinc finger and BTB domain-containing protein 8A isoform 1
See identical proteins and their annotated locations for NP_001035531.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AL033529, BC015239, DA530035
- Consensus CDS
-
CCDS30664.1
- UniProtKB/Swiss-Prot
- Q8IUL5, Q8IWR9, Q8N2Y5, Q96BR9, Q96BX0
- Related
- ENSP00000362609.3, ENST00000373510.9
- Conserved Domains (5) summary
-
- smart00225
Location:25 → 122
- BTB; Broad-Complex, Tramtrack and Bric a brac
- COG5048
Location:282 → 335
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:284 → 304
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00651
Location:14 → 119
- BTB; BTB/POZ domain
- pfam13465
Location:296 → 321
- zf-H2C2_2; Zinc-finger double domain
-
NM_001291496.2 → NP_001278425.1 zinc finger and BTB domain-containing protein 8A isoform 2
See identical proteins and their annotated locations for NP_001278425.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL033529, AY157873, BQ723271, DA530035
- Consensus CDS
-
CCDS76133.1
- UniProtKB/TrEMBL
- A0A9K3Y7J5, D3DPQ1, F8W7Q7
- Related
- ENSP00000317561.4, ENST00000316459.4
- Conserved Domains (4) summary
-
- smart00225
Location:25 → 122
- BTB; Broad-Complex, Tramtrack and Bric a brac
- sd00017
Location:284 → 304
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00651
Location:14 → 119
- BTB; BTB/POZ domain
- pfam13465
Location:296 → 321
- zf-H2C2_2; Zinc-finger double domain
RNA
-
NR_111980.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an internal exon and uses an alternate splice site at the 3' terminal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
- Source sequence(s)
-
AL033529, DA530035, HY034825, KF495898
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
32539427..32605941
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
32397348..32464729
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_144621.2: Suppressed sequence
- Description
- NM_144621.2: This RefSeq was permanently suppressed becauses it is a nonsense-mediated mRNA decay (NMD) candidate and represents a read-through transcript.