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    ARCN1 archain 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 533078, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ARCN1provided by VGNC
    Official Full Name
    archain 1provided by VGNC
    Primary source
    VGNC:VGNC:26057
    See related
    BGD:BT20134; Ensembl:ENSBTAG00000006690
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ARCN1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (29227702..29256278)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 25 Neighboring gene microRNA mir-2285ak Neighboring gene intraflagellar transport 46 Neighboring gene pleckstrin homology like domain family B member 1 Neighboring gene microRNA mir-12011 Neighboring gene trehalase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The debate about transport in the Golgi--two sides of the same coin? Pelham HR, et al. Cell, 2000 Sep 15. PMID 11030615
    2. Architecture of coatomer: molecular characterization of delta-COP and protein interactions within the complex. Faulstich D, et al. J Cell Biol, 1996 Oct. PMID 8858162, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coatomer subunit delta
    Names
    coat protein delta-cop
    coatomer protein complex, subunit delta
    delta-COP
    delta-coat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195013.1 → NP_001181942.1  coatomer subunit delta

      See identical proteins and their annotated locations for NP_001181942.1

      Status: PROVISIONAL

      Source sequence(s)
      GJ062403
      UniProtKB/Swiss-Prot
      P53619
      UniProtKB/TrEMBL
      A0AAF7AMW6
      Related
      ENSBTAP00000008799.4, ENSBTAT00000008799.5
      Conserved Domains (2) summary
      cd09254
      Location:272 → 508
      AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
      cd14830
      Location:4 → 133
      Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      29227702..29256278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P53619.1 GenPept UniProtKB/Swiss-Prot:P53619

    Gene LinkOut

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