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    A930005H10Rik RIKEN cDNA A930005H10 gene [ Mus musculus (house mouse) ]

    Gene ID: 68161, updated on 22-Oct-2024

    Summary

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    Official Symbol
    A930005H10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A930005H10 geneprovided by MGI
    Primary source
    MGI:MGI:1915411
    See related
    Ensembl:ENSMUSG00000054426 AllianceGenome:MGI:1915411
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in spleen adult (RPKM 11.8), mammary gland adult (RPKM 8.2) and 28 other tissues See more
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    Genomic context

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    See A930005H10Rik in Genome Data Viewer
    Location:
    3 G1; 3 50.13 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (115675227..115681779, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (115881578..115888130, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11211 Neighboring gene STARR-positive B cell enhancer ABC_E2096 Neighboring gene STARR-seq mESC enhancer starr_08763 Neighboring gene sphingosine-1-phosphate receptor 1 Neighboring gene predicted gene 9889 Neighboring gene STARR-positive B cell enhancer ABC_E7938 Neighboring gene STARR-positive B cell enhancer ABC_E11212 Neighboring gene STARR-seq mESC enhancer starr_08765 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:115518463-115518646 Neighboring gene STARR-seq mESC enhancer starr_08766 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:115591074-115591257 Neighboring gene diphthamide biosynthesis 5 Neighboring gene predicted gene, 54180 Neighboring gene solute carrier family 30 (zinc transporter), member 7 Neighboring gene E74-like factor 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015487.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon and has an alternate splice site, as compared to variant 1.
      Source sequence(s)
      AK007373, AK020812, AW047335
      Related
      ENSMUST00000185681.3

    2. NR_027894.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) includes three exons.
      Source sequence(s)
      AW047335, BF019418
      Related
      ENSMUST00000188260.9

    3. NR_027895.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) is intronless and has an alternate 3' sequence, as compared to variant 1.
      Source sequence(s)
      AK081943, BB849893

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      115675227..115681779 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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