LINC01114 long intergenic non-protein coding RNA 1114 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LINC01114provided by HGNC
Official Full Name: long intergenic non-protein coding RNA 1114provided by HGNC
Primary source: HGNC:HGNC:49245
See related: Ensembl:ENSG00000233639 AllianceGenome:HGNC:49245
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: PANCAT
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: 2q12.1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	2	NC_000002.12 (104746637..104757719, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	2	NC_060926.1 (105206473..105217548, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	2	NC_000002.11 (105363095..105374177, complement)

Chromosome 2 - NC_000002.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

gene polymorphism is associated with increased gastric cancer risk in the Han Chinese population
Title: Genetic polymorphisms are associated with the risk of gastric and colorectal cancers in a Han Chinese population.

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

RH11892 (e-PCR)
- UniSTS:91916

SHGC-148002 (e-PCR)
- UniSTS:176153

A006S23 (e-PCR)
- UniSTS:10048

D2S2364 (e-PCR), detects polymorphism
- UniSTS:36981

Cda0zg01 (e-PCR)
- UniSTS:59263

D2S2006 (e-PCR)
- UniSTS:74196

SHGC-84769 (e-PCR)
- UniSTS:104154

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.