U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Vmn2r29 vomeronasal 2, receptor 29 [ Mus musculus (house mouse) ]

    Gene ID: 76229, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Vmn2r29provided by MGI
    Official Full Name
    vomeronasal 2, receptor 29provided by MGI
    Primary source
    MGI:MGI:1923479
    See related
    Ensembl:ENSMUSG00000095730 Ensembl:ENSMUSG00000110105 AllianceGenome:MGI:1923479
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6430701C03Rik
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in frontal lobe adult (RPKM 1.2), CNS E18 (RPKM 1.1) and 23 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Vmn2r29 in Genome Data Viewer
    Location:
    7 A1; 7 4.2 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (7215995..7281288, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (7212996..7278289, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 418 Neighboring gene STARR-positive B cell enhancer ABC_E4895 Neighboring gene zinc finger protein 772 Neighboring gene zinc finger protein 772 pseudogene Neighboring gene chloride channel, voltage-sensitive 4 Neighboring gene microRNA 5620 Neighboring gene vomeronasal 2, receptor 30

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    vomeronasal 2, receptor 29
    Names
    vomeronasal receptor Vmn2r29

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113468.1 → NP_001106939.1  vomeronasal 2, receptor 29 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript and encodes the inferred protein product at this locus.
      Source sequence(s)
      AC149056, AC150745
      Consensus CDS
      CCDS51993.1
      UniProtKB/TrEMBL
      K7N652, L7N2D4
      Related
      ENSMUSP00000131990.2, ENSMUST00000170922.2
      Conserved Domains (4) summary
      pfam00003
      Location:599 → 833
      7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
      pfam01094
      Location:75 → 453
      ANF_receptor; Receptor family ligand binding region
      pfam07562
      Location:513 → 564
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cl10011
      Location:39 → 503
      Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

    RNA

    1. NR_003555.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2), based on the predominant transcript evidence at the locus, lacks several coding exons, compared to variant 1. The predicted protein would be truncated, compared to the variant 1 product, and most likely not functional. Variant 2 is represented as a non-protein-coding transcript.
      Source sequence(s)
      BC096375, BE987147, BY089007
      Related
      ENSMUST00000209833.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      7215995..7281288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools