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    Gm16835 predicted gene, 16835 [ Mus musculus (house mouse) ]

    Gene ID: 102635192, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm16835provided by MGI
    Official Full Name
    predicted gene, 16835provided by MGI
    Primary source
    MGI:MGI:4439759
    See related
    Ensembl:ENSMUSG00000087479 AllianceGenome:MGI:4439759
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 5.1), adrenal adult (RPKM 1.0) and 9 other tissues See more
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    Genomic context

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    See Gm16835 in Genome Data Viewer
    Location:
    14 E4; 14 62.65 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (119336377..119352486)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (119098965..119115074)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4125 Neighboring gene DAZ interacting protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:119381910-119382076 Neighboring gene STARR-positive B cell enhancer mm9_chr14:119406665-119406966 Neighboring gene DnaJ heat shock protein family (Hsp40) member C3 Neighboring gene coiled-coil domain-containing protein 58 pseudogene Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene STARR-seq mESC enhancer starr_37667 Neighboring gene heparan sulfate 6-O-sulfotransferase 3 Neighboring gene STARR-seq mESC enhancer starr_37668 Neighboring gene STARR-seq mESC enhancer starr_37669 Neighboring gene STARR-seq mESC enhancer starr_37670 Neighboring gene STARR-seq mESC enhancer starr_37671 Neighboring gene tera pseudogene Neighboring gene CD24a antigen pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_153786.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154760, AK147121
      Related
      ENSMUST00000140488.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      119336377..119352486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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