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    Gys1 glycogen synthase 1, muscle [ Mus musculus (house mouse) ]

    Gene ID: 14936, updated on 5-Nov-2024

    Summary

    Official Symbol
    Gys1provided by MGI
    Official Full Name
    glycogen synthase 1, muscleprovided by MGI
    Primary source
    MGI:MGI:101805
    See related
    Ensembl:ENSMUSG00000003865 AllianceGenome:MGI:101805
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MGS; Gys3
    Summary
    Enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity and glycogen synthase activity, transferring glucose-1-phosphate. Involved in glycogen biosynthetic process. Acts upstream of or within heart development. Located in cytoplasm and inclusion body. Is active in cytosol. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in cardiovascular system disease. Orthologous to human GYS1 (glycogen synthase 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in mammary gland adult (RPKM 63.2), heart adult (RPKM 38.0) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gys1 in Genome Data Viewer
    Location:
    7 B3; 7 29.31 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (45084263..45106041)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45434839..45456617)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene stabilizer of axonemal microtubules 3 Neighboring gene RuvB-like AAA ATPase 2 Neighboring gene luteinizing hormone beta Neighboring gene STARR-positive B cell enhancer ABC_E349 Neighboring gene STARR-seq mESC enhancer starr_18840 Neighboring gene ferritin light polypeptide 1 Neighboring gene STARR-seq mESC enhancer starr_18841 Neighboring gene BCL2-associated X protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in glycogen biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within glycogen biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in glycogen biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in glycogen biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in glycogen metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in inclusion body IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    glycogen [starch] synthase, muscle
    Names
    glycogen synthase 3, brain
    NP_109603.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030678.3NP_109603.2  glycogen [starch] synthase, muscle

      See identical proteins and their annotated locations for NP_109603.2

      Status: VALIDATED

      Source sequence(s)
      AK169344, AK171426, BB853436
      Consensus CDS
      CCDS21244.1
      UniProtKB/Swiss-Prot
      P54859, Q3TBN4, Q8BQG4, Q8VEB0, Q9Z1E4
      UniProtKB/TrEMBL
      A0A1B0GT92
      Related
      ENSMUSP00000003964.9, ENSMUST00000003964.17
      Conserved Domains (2) summary
      pfam05693
      Location:31663
      Glycogen_syn; Glycogen synthase
      pfam15151
      Location:645732
      RGCC; Response gene to complement 32 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      45084263..45106041
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)