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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_022911.2 RefSeqGene
- Range
-
5000..43061
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001381939.1 → NP_001368868.1 thrombospondin-2 isoform 2 precursor
Status: REVIEWED
- Source sequence(s)
-
BX322234
- Consensus CDS
-
CCDS94038.1
- UniProtKB/TrEMBL
- A0A3B3ITK0, A0A7I2V585
- Related
- ENSP00000504416.1, ENST00000676628.1
- Conserved Domains (11) summary
-
- smart00209
Location:440 → 492
- TSP1; Thrombospondin type 1 repeats
- smart00210
Location:20 → 215
- TSPN; Thrombospondin N-terminal -like domains
- sd00001
Location:789 → 826
- TSP3; TSP3 repeat_long [structural motif]
- sd00002
Location:731 → 765
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:635 → 670
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam00093
Location:320 → 374
- VWC; von Willebrand factor type C domain
- pfam02412
Location:789 → 826
- TSP_3; Thrombospondin type 3 repeat
- pfam00090
Location:385 → 430
- TSP_1; Thrombospondin type 1 domain
- pfam05735
Location:916 → 1113
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:594 → 633
- EGF_3; EGF domain
- NF033845
Location:707 → 935
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001381940.1 → NP_001368869.1 thrombospondin-2 isoform 3 precursor
Status: REVIEWED
- Source sequence(s)
-
BX322234
- Related
-
ENST00000677398.1
- Conserved Domains (5) summary
-
- smart00209
Location:497 → 549
- TSP1; Thrombospondin type 1 repeats
- smart00210
Location:20 → 215
- TSPN; Thrombospondin N-terminal -like domains
- pfam00093
Location:320 → 374
- VWC; von Willebrand factor type C domain
- pfam00090
Location:385 → 430
- TSP_1; Thrombospondin type 1 domain
- pfam12947
Location:652 → 691
- EGF_3; EGF domain
-
NM_001381941.1 → NP_001368870.1 thrombospondin-2 isoform 4 precursor
Status: REVIEWED
- Source sequence(s)
-
BX322234
- Conserved Domains (1) summary
-
- smart00210
Location:20 → 215
- TSPN; Thrombospondin N-terminal -like domains
-
NM_001381942.1 → NP_001368871.1 thrombospondin-2 isoform 5
Status: REVIEWED
- Source sequence(s)
-
BX322234
- UniProtKB/TrEMBL
-
A0A3B3ITK0
- Conserved Domains (11) summary
-
- smart00209
Location:420 → 472
- TSP1; Thrombospondin type 1 repeats
- sd00001
Location:770 → 807
- TSP3; TSP3 repeat_long [structural motif]
- sd00002
Location:712 → 746
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:616 → 651
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam00093
Location:243 → 297
- VWC; von Willebrand factor type C domain
- pfam02412
Location:770 → 807
- TSP_3; Thrombospondin type 3 repeat
- pfam00090
Location:308 → 353
- TSP_1; Thrombospondin type 1 domain
- pfam05735
Location:897 → 1094
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:575 → 614
- EGF_3; EGF domain
- NF033845
Location:688 → 916
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
- cl22861
Location:1 → 138
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
NM_003247.5 → NP_003238.2 thrombospondin-2 isoform 1 precursor
See identical proteins and their annotated locations for NP_003238.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BX322234
- Consensus CDS
-
CCDS34574.1
- UniProtKB/Swiss-Prot
- A6H8N1, A7E232, P35442, Q5RI52
- UniProtKB/TrEMBL
-
A0A3B3ITK0
- Related
- ENSP00000482784.1, ENST00000617924.6
- Conserved Domains (10) summary
-
- smart00209
Location:497 → 549
- TSP1; Thrombospondin type 1 repeats
- smart00210
Location:20 → 215
- TSPN; Thrombospondin N-terminal -like domains
- sd00001
Location:847 → 884
- TSP3; TSP3 repeat_long [structural motif]
- sd00002
Location:789 → 823
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:693 → 728
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam00090
Location:385 → 430
- TSP_1; Thrombospondin type 1 domain
- pfam00093
Location:320 → 374
- VWC; von Willebrand factor type C domain
- pfam02412
Location:848 → 884
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:974 → 1171
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:652 → 691
- EGF_3; EGF domain
RNA
-
NR_167744.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
BX322234
- Related
-
ENST00000677429.1
-
NR_167745.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
BX322234
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
169215785..169253846 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
170567396..170606903 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054356286.1 → XP_054212261.1 thrombospondin-2 isoform X1
- UniProtKB/Swiss-Prot
- A6H8N1, A7E232, P35442, Q5RI52