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    SNHG4 small nucleolar RNA host gene 4 [ Homo sapiens (human) ]

    Gene ID: 724102, updated on 17-Sep-2024

    Summary

    Official Symbol
    SNHG4provided by HGNC
    Official Full Name
    small nucleolar RNA host gene 4provided by HGNC
    Primary source
    HGNC:HGNC:32964
    See related
    Ensembl:ENSG00000281398 AllianceGenome:HGNC:32964
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U19H; NCRNA00059
    Expression
    Ubiquitous expression in lymph node (RPKM 2.0), appendix (RPKM 1.6) and 23 other tissues See more
    NEW
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    Try the new Transcript table

    Genomic context

    See SNHG4 in Genome Data Viewer
    Location:
    5q31.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (139274101..139284900)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (139800176..139810976)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (138609790..138620589)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene SIL1 nucleotide exchange factor Neighboring gene ribosomal protein L12 pseudogene 21 Neighboring gene MPRA-validated peak5496 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16405 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:138559318-138560164 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:138567539-138568038 Neighboring gene RNA, U6 small nuclear 572, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23217 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16406 Neighboring gene uncharacterized LOC124901081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23218 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16407 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:138629501-138630204 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:138630205-138630907 Neighboring gene small nucleolar RNA, H/ACA box 74D Neighboring gene small nucleolar RNA, H/ACA box 74A Neighboring gene Sharpr-MPRA regulatory region 13556 Neighboring gene matrin 3 Neighboring gene RNA, 5S ribosomal pseudogene 195 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:138657767-138658966 Neighboring gene RN7SK pseudogene 64

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough MATR3

    Readthrough gene: MATR3

    Other Names

    • U19 host
    • small nucleolar RNA host gene (non-protein coding) 4
    • small nucleolar RNA host gene 4 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003141.4 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    2. NR_036536.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
      Related
      ENST00000505522.6
    3. NR_182749.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
      Related
      ENST00000648842.1
    4. NR_182750.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    5. NR_182751.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    6. NR_182752.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    7. NR_182753.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    8. NR_182754.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    9. NR_182755.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    10. NR_182756.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404
    11. NR_182757.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011404

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      139274101..139284900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      139800176..139810976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)