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    LOC339539 uncharacterized LOC339539 [ Homo sapiens (human) ]

    Gene ID: 339539, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC339539
    Gene description
    uncharacterized LOC339539
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC339539 in Genome Data Viewer
    Location:
    1p34.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (42857622..42888792)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (42728110..42759272)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (43323293..43354463)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene erythroblast membrane associated protein (Scianna blood group) Neighboring gene ZNF691 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 898 Neighboring gene zinc finger protein 691 Neighboring gene transmembrane channel like 6 pseudogene Neighboring gene makorin ring finger protein 8, pseudogene Neighboring gene ATPase H+ transporting V1 subunit E1 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL512353, BC043541

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      42857622..42888792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      42728110..42759272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)