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    NAPSB napsin B aspartic peptidase (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 256236, updated on 22-Oct-2024

    Summary

    Official Symbol
    NAPSBprovided by HGNC
    Official Full Name
    napsin B aspartic peptidase (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:13396
    See related
    Ensembl:ENSG00000291230 AllianceGenome:HGNC:13396
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NAP2; NAPB; NAP1L; NAPSBP
    Expression
    Biased expression in lymph node (RPKM 71.9), spleen (RPKM 45.6) and 9 other tissues See more
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    Genomic context

    See NAPSB in Genome Data Viewer
    Location:
    19q13.33
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (50333800..50344767, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (53421336..53432322, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (50837057..50848024, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904746 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:50718498-50719073 Neighboring gene myosin heavy chain 14 Neighboring gene Sharpr-MPRA regulatory region 11309 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14977 Neighboring gene Sharpr-MPRA regulatory region 8620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:50795061-50795589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:50795590-50796117 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:50816362-50816890 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:50819536-50819716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10952 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:50829251-50829772 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10954 Neighboring gene Sharpr-MPRA regulatory region 11330/13384 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10956 Neighboring gene uncharacterized LOC105372437 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:50833762-50833941 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14978 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14979 Neighboring gene potassium voltage-gated channel subfamily C member 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:50836875-50837827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14980 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14982 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14983 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14984 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:50879623-50880434 Neighboring gene napsin A aspartic peptidase Neighboring gene nuclear receptor subfamily 1 group H member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Other Names

    • napsin 2
    • napsin A aspartic peptidase pseudogene
    • napsin B pseudogene
    • napsin-A pseudogene
    • pronapsin B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002798.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008655
      Related
      ENST00000527780.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      50333800..50344767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      53421336..53432322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)