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    BAALC-AS2 BAALC antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 157556, updated on 17-Sep-2024

    Summary

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    Official Symbol
    BAALC-AS2provided by HGNC
    Official Full Name
    BAALC antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:28595
    See related
    AllianceGenome:HGNC:28595
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BAALCOS; C8orf56
    Expression
    Biased expression in brain (RPKM 1.5), skin (RPKM 0.4) and 5 other tissues See more
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    Genomic context

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    See BAALC-AS2 in Genome Data Viewer
    Location:
    8q22.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (103132963..103141342, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (104260912..104269291, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (104145191..104153570, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene MT-CO1 pseudogene 4 Neighboring gene MT-CO2 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:104117877-104118378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:104134297-104134798 Neighboring gene long intergenic non-protein coding RNA 1181 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19454 Neighboring gene BAALC binder of MAP3K1 and KLF4 Neighboring gene BAALC antisense RNA 1 Neighboring gene microRNA 3151

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. Oláh J, et al. J Biol Chem, 2011 Sep 30. PMID 21832049, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • BAALC opposite strand

    Clone Names

    • MGC39526

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027071.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC029562

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      103132963..103141342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      104260912..104269291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_198099.1: Suppressed sequence

      Description
      NM_198099.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C853.1 GenPept UniProtKB/Swiss-Prot:P0C853

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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