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    RIF1 replication timing regulatory factor 1 [ Gallus gallus (chicken) ]

    Gene ID: 424316, updated on 17-Aug-2024

    Summary

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    Symbol
    RIF1provided by CGNC
    Full Name
    replication timing regulatory factor 1provided by CGNC
    Primary source
    CGNC:9484
    See related
    Ensembl:ENSGALG00010009850
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RIF1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (34755065..34785105)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (34672509..34702540)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene TNF alpha induced protein 6 Neighboring gene N-myc and STAT interactor Neighboring gene nebulin Neighboring gene ADP ribosylation factor like GTPase 5A Neighboring gene calcium voltage-gated channel auxiliary subunit beta 4 Neighboring gene uncharacterized LOC101748276

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice. Escribano-Díaz C, et al. Mol Cell, 2013 Mar 7. PMID 23333306
    2. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
    3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere-associated protein RIF1
    Names
    RAP1 interacting factor homolog
    rap1-interacting factor 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396476.1 → NP_001383405.1  telomere-associated protein RIF1

      Status: VALIDATED

      Source sequence(s)
      AJ397300, BU226400, BU236943, BU237462, BU264082, BU271291, BU326760, BU402218, CN210741, CR386671, HAEK01028008, JAENSK010000236, JZ982886
      UniProtKB/Swiss-Prot
      A0A1D5PUQ3, E1C2U2
      UniProtKB/TrEMBL
      A0A8V0Y7K6
      Related
      ENSGALP00010013562.1, ENSGALT00010023533.1
      Conserved Domains (3) summary
      PTZ00121
      Location:1290 → 1881
      PTZ00121; MAEBL; Provisional
      PRK13108
      Location:1837 → 2006
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd14267
      Location:2164 → 2211
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      34755065..34785105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015289867.4 → XP_015145353.2  telomere-associated protein RIF1 isoform X1

      UniProtKB/Swiss-Prot
      A0A1D5PUQ3, E1C2U2
      UniProtKB/TrEMBL
      A0A8V0Y7K0
      Related
      ENSGALP00010013557.1, ENSGALT00010023524.1
      Conserved Domains (3) summary
      PTZ00121
      Location:1290 → 1881
      PTZ00121; MAEBL; Provisional
      PRK13108
      Location:1837 → 2006
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd14267
      Location:2138 → 2185
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains

    RNA

    1. XR_001467565.4 RNA Sequence

    2. XR_003076168.3 RNA Sequence

    3. XR_005861780.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      34672509..34702540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040677131.2 → XP_040533065.1  telomere-associated protein RIF1 isoform X1

      UniProtKB/Swiss-Prot
      A0A1D5PUQ3, E1C2U2
      Conserved Domains (2) summary
      PTZ00121
      Location:1293 → 1991
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2138 → 2185
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains

    RNA

    1. XR_005852035.2 RNA Sequence

    2. XR_005852036.2 RNA Sequence

    3. XR_005852037.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E1C2U2.3 GenPept UniProtKB/Swiss-Prot:E1C2U2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials