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    UTP4 UTP4, small subunit processome component [ Gallus gallus (chicken) ]

    Gene ID: 769632, updated on 17-Aug-2024

    Summary

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    Symbol
    UTP4provided by CGNC
    Full Name
    UTP4, small subunit processome componentprovided by CGNC
    Primary source
    CGNC:55410
    See related
    Ensembl:ENSGALG00010008167
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CIRH1A
    Orthologs
    human mouse all
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    Genomic context

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    See UTP4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (18562005..18566735)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (18909994..18914725)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene hyaluronan synthase 3 Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene syntrophin beta 2 Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene component of oligomeric golgi complex 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of t-UTP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-associated protein 4 homolog; LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog
    Names
    cirrhosis, autosomal recessive 1A (cirhin)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      18562005..18566735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001232919.7 → XP_001232920.3  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0XWI9
      Related
      ENSGALP00010011049.1, ENSGALT00010019501.1
      Conserved Domains (2) summary
      sd00039
      Location:21 → 57
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:16 → 307
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      18909994..18914725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040681176.2 → XP_040537110.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0XWI9
      Conserved Domains (2) summary
      sd00039
      Location:21 → 57
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:16 → 307
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_040681177.2 → XP_040537111.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0XWI9
      Conserved Domains (2) summary
      sd00039
      Location:21 → 57
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:16 → 307
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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