U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TAF8 TATA-box binding protein associated factor 8 [ Gallus gallus (chicken) ]

    Gene ID: 419929, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Symbol
    TAF8provided by CGNC
    Full Name
    TATA-box binding protein associated factor 8provided by CGNC
    Primary source
    CGNC:2552
    See related
    Ensembl:ENSGALG00010026671
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TBN
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TAF8 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (5110045..5117712)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (5063730..5071439)

    Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 20 Neighboring gene bystin like Neighboring gene cyclin D3 Neighboring gene chitinase-M31, acidic Neighboring gene primary cilia formation

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription initiation factor TFIID subunit 8
    Names
    TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa
    TBP-associated factor 8
    taube nuss homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030923.2 → NP_001026094.1  transcription initiation factor TFIID subunit 8

      See identical proteins and their annotated locations for NP_001026094.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000356
      UniProtKB/Swiss-Prot
      Q5ZMS1
      UniProtKB/TrEMBL
      A0A8V1A8P9
      Conserved Domains (2) summary
      cd08049
      Location:81 → 134
      TAF8; TATA Binding Protein (TBP) Associated Factor 8
      cl22885
      Location:1 → 43
      TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5110045..5117712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015298954.4 → XP_015154440.1  transcription initiation factor TFIID subunit 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ABJ9, R4GIW1
      Related
      ENSGALP00010039603.1, ENSGALT00010064747.1
      Conserved Domains (2) summary
      cd08049
      Location:149 → 202
      TAF8; TATA Binding Protein (TBP) Associated Factor 8
      pfam07524
      Location:35 → 111
      Bromo_TP; Bromodomain associated

    2. XM_046904134.1 → XP_046760090.1  transcription initiation factor TFIID subunit 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A167

    3. XM_015298955.4 → XP_015154441.2  transcription initiation factor TFIID subunit 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A167, A0A8V1A8P9
      Related
      ENSGALP00010039607.1, ENSGALT00010064756.1
      Conserved Domains (2) summary
      smart00576
      Location:21 → 91
      BTP; Bromodomain transcription factors and PHD domain containing proteins
      cd08049
      Location:131 → 184
      TAF8; TATA Binding Protein (TBP) Associated Factor 8

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5063730..5071439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046933001.1 → XP_046788957.1  transcription initiation factor TFIID subunit 8 isoform X1

      UniProtKB/TrEMBL
      R4GIW1

    2. XM_046933002.1 → XP_046788958.1  transcription initiation factor TFIID subunit 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A167

    3. XM_046933004.1 → XP_046788960.1  transcription initiation factor TFIID subunit 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A167
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZMS1.1 GenPept UniProtKB/Swiss-Prot:Q5ZMS1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.