U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    VPS4A vacuolar protein sorting 4 homolog A [ Gallus gallus (chicken) ]

    Gene ID: 425637, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    VPS4Aprovided by CGNC
    Official Full Name
    vacuolar protein sorting 4 homolog Aprovided by CGNC
    Primary source
    CGNC:66170
    See related
    Ensembl:ENSGALG00010008188
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VPS4A in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (18573051..18576265)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (18921034..18924249)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene UTP4, small subunit processome component Neighboring gene syntrophin beta 2 Neighboring gene component of oligomeric golgi complex 8 Neighboring gene NIP7, nucleolar pre-rRNA processing protein Neighboring gene transmembrane p24 trafficking protein 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vacuolar protein sorting-associated protein 4A
    XP_015148165.2
    XP_040537122.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      18573051..18576265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015292679.4 → XP_015148165.2  vacuolar protein sorting-associated protein 4A

      UniProtKB/TrEMBL
      A0A8V0XWR8
      Related
      ENSGALP00010011127.1, ENSGALT00010019579.1
      Conserved Domains (4) summary
      cd02678
      Location:5 → 79
      MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
      pfam09336
      Location:374 → 434
      Vps4_C; Vps4 C terminal oligomerization domain
      pfam17862
      Location:318 → 359
      AAA_lid_3; AAA+ lid domain
      cd19521
      Location:121 → 291
      RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      18921034..18924249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040681188.2 → XP_040537122.1  vacuolar protein sorting-associated protein 4A

      UniProtKB/TrEMBL
      A0A8V0XWR8
      Conserved Domains (4) summary
      cd02678
      Location:5 → 79
      MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
      pfam09336
      Location:374 → 434
      Vps4_C; Vps4 C terminal oligomerization domain
      pfam17862
      Location:318 → 359
      AAA_lid_3; AAA+ lid domain
      cd19521
      Location:121 → 291
      RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.