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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001128212.3 → NP_001121684.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_001121684.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1.
- Source sequence(s)
-
AK093494, AL040518, CB240898, DR000438
- Consensus CDS
-
CCDS2208.1
- UniProtKB/Swiss-Prot
- Q53TI9, Q8N6N8, Q8N9V3
- Related
- ENSP00000352820.4, ENST00000359774.9
- Conserved Domains (6) summary
-
- cd09505
Location:328 → 399
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:332 → 395
- SAM; Sterile alpha motif
- COG2319
Location:2 → 308
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:4 → 309
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam04564
Location:404 → 476
- U-box; U-box domain
- sd00039
Location:16 → 52
- 7WD40; WD40 repeat [structural motif]
-
NM_001128213.2 → NP_001121685.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_001121685.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC008277, AK129983, AL040518, CB240898
- Consensus CDS
-
CCDS2208.1
- UniProtKB/Swiss-Prot
- Q53TI9, Q8N6N8, Q8N9V3
- Related
- ENSP00000387078.3, ENST00000409990.7
- Conserved Domains (6) summary
-
- cd09505
Location:328 → 399
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:332 → 395
- SAM; Sterile alpha motif
- COG2319
Location:2 → 308
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:4 → 309
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam04564
Location:404 → 476
- U-box; U-box domain
- sd00039
Location:16 → 52
- 7WD40; WD40 repeat [structural motif]
-
NM_001307994.2 → NP_001294923.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 2
See identical proteins and their annotated locations for NP_001294923.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks several exons in the central coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1, but maintains the same N- and C-termini.
- Source sequence(s)
-
AK093494, BC029520
- Consensus CDS
-
CCDS77477.1
- UniProtKB/Swiss-Prot
-
Q8N9V3
- Related
- ENSP00000350866.4, ENST00000358147.8
- Conserved Domains (6) summary
-
- cd09505
Location:236 → 307
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:240 → 303
- SAM; Sterile alpha motif
- COG2319
Location:3 → 253
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:3 → 217
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam04564
Location:312 → 384
- U-box; U-box domain
- sd00039
Location:16 → 52
- 7WD40; WD40 repeat [structural motif]
-
NM_001330274.2 → NP_001317203.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC008277, AC009307, KF456729
- Consensus CDS
-
CCDS82525.1
- UniProtKB/TrEMBL
-
B8ZZF2
- Related
- ENSP00000386891.1, ENST00000409124.1
- Conserved Domains (6) summary
-
- smart00454
Location:332 → 377
- SAM; Sterile alpha motif
- COG2319
Location:2 → 308
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:4 → 309
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:16 → 52
- 7WD40; WD40 repeat [structural motif]
- cl15755
Location:328 → 377
- SAM_superfamily; SAM (Sterile alpha motif )
- cl17238
Location:378 → 429
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
-
NM_001330276.2 → NP_001317205.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC008277, AC009307, KF456729
-
NM_001330277.2 → NP_001317206.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC008277, AC009307, KF456729
- Conserved Domains (6) summary
-
- cd09505
Location:241 → 312
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:245 → 308
- SAM; Sterile alpha motif
- COG2319
Location:15 → 221
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:11 → 224
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam04564
Location:317 → 389
- U-box; U-box domain
- sd00039
Location:57 → 91
- 7WD40; WD40 repeat [structural motif]
-
NM_001330278.2 → NP_001317207.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC008277, AC009307, KF456729
- Consensus CDS
-
CCDS2208.1
- UniProtKB/Swiss-Prot
- Q53TI9, Q8N6N8, Q8N9V3
- Conserved Domains (6) summary
-
- cd09505
Location:328 → 399
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:332 → 395
- SAM; Sterile alpha motif
- COG2319
Location:2 → 308
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:4 → 309
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam04564
Location:404 → 476
- U-box; U-box domain
- sd00039
Location:16 → 52
- 7WD40; WD40 repeat [structural motif]
-
NM_001330279.2 → NP_001317208.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC008277, AC009307, KF456729
- Conserved Domains (6) summary
-
- cd09505
Location:159 → 230
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:163 → 226
- SAM; Sterile alpha motif
- COG2319
Location:7 → 155
- WD40; WD40 repeat [General function prediction only]
- pfam04564
Location:235 → 307
- U-box; U-box domain
- sd00039
Location:15 → 68
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:1 → 155
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001330280.2 → NP_001317209.1 WD repeat, SAM and U-box domain-containing protein 1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC008277, AC009307, KF456729
- Conserved Domains (4) summary
-
- cd09505
Location:90 → 161
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- pfam04564
Location:166 → 238
- U-box; U-box domain
- cd16655
Location:172 → 210
- RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger [structural motif]
- cl25539
Location:20 → 80
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_152528.3 → NP_689741.2 WD repeat, SAM and U-box domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_689741.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1.
- Source sequence(s)
-
AC008277, AK093494, AL040518, CB240898
- Consensus CDS
-
CCDS2208.1
- UniProtKB/Swiss-Prot
- Q53TI9, Q8N6N8, Q8N9V3
- Related
- ENSP00000376545.3, ENST00000392796.7
- Conserved Domains (6) summary
-
- cd09505
Location:328 → 399
- SAM_WDSUB1; SAM domain of WDSUB1 proteins
- smart00454
Location:332 → 395
- SAM; Sterile alpha motif
- COG2319
Location:2 → 308
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:4 → 309
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam04564
Location:404 → 476
- U-box; U-box domain
- sd00039
Location:16 → 52
- 7WD40; WD40 repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
159235798..159286703 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047443531.1 → XP_047299487.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X9
-
XM_047443529.1 → XP_047299485.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X7
-
XM_047443528.1 → XP_047299484.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X6
-
XM_047443526.1 → XP_047299482.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X4
-
XM_047443525.1 → XP_047299481.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X3
-
XM_047443527.1 → XP_047299483.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X5
-
XM_047443524.1 → XP_047299480.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
B8ZZF2
-
XM_017003481.2 → XP_016858970.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X2
-
XM_047443530.1 → XP_047299486.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X8
RNA
-
XR_001738650.3 RNA Sequence
-
XR_007069663.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
159695595..159746544 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054340816.1 → XP_054196791.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X9
-
XM_054340814.1 → XP_054196789.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X7
-
XM_054340813.1 → XP_054196788.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X6
-
XM_054340811.1 → XP_054196786.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X4
-
XM_054340810.1 → XP_054196785.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X3
-
XM_054340812.1 → XP_054196787.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X5
-
XM_054340808.1 → XP_054196783.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
B8ZZF2
-
XM_054340809.1 → XP_054196784.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X2
-
XM_054340815.1 → XP_054196790.1 WD repeat, SAM and U-box domain-containing protein 1 isoform X8
RNA
-
XR_008486296.1 RNA Sequence
-
XR_008486295.1 RNA Sequence