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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001360615.1 → NP_001347544.1 alkaline ceramidase 3 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AC119880, AK017361
- Consensus CDS
-
CCDS90274.1
- UniProtKB/TrEMBL
-
D3YTU8
- Related
- ENSMUSP00000112884.2, ENSMUST00000120520.8
- Conserved Domains (1) summary
-
- pfam05875
Location:1 → 217
- Ceramidase; Ceramidase
-
NM_001360616.1 → NP_001347545.1 alkaline ceramidase 3 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC111084, AC119880
- Conserved Domains (1) summary
-
- pfam05875
Location:7 → 156
- Ceramidase
-
NM_001360617.1 → NP_001347546.1 alkaline ceramidase 3 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) contains an alternate exon compared to variant 1. The resulting isoform (4) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC111084, AC119880
- Conserved Domains (1) summary
-
- pfam05875
Location:60 → 149
- Ceramidase
-
NM_025408.3 → NP_079684.2 alkaline ceramidase 3 isoform 1
See identical proteins and their annotated locations for NP_079684.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC111084, AC119880
- Consensus CDS
-
CCDS21468.1
- UniProtKB/Swiss-Prot
- Q542R2, Q9D099, Q9D0X4, Q9D3J4
- Related
- ENSMUSP00000033020.8, ENSMUST00000033020.14
- Conserved Domains (1) summary
-
- pfam05875
Location:9 → 259
- Ceramidase; Ceramidase
RNA
-
NR_153759.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC111084, AC119880
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000073.7 Reference GRCm39 C57BL/6J
- Range
-
97863015..97970415 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030242889.2 → XP_030098749.1 alkaline ceramidase 3 isoform X1
- Conserved Domains (1) summary
-
- pfam05875
Location:4 → 153
- Ceramidase
RNA
-
XR_004934168.1 RNA Sequence