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    Snhg11 small nucleolar RNA host gene 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362256, updated on 2-Nov-2024

    Summary

    Official Symbol
    Snhg11provided by RGD
    Official Full Name
    small nucleolar RNA host gene 11provided by RGD
    Primary source
    RGD:1563912
    See related
    AllianceGenome:RGD:1563912
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563912
    Summary
    Orthologous to human SNHG11 (small nucleolar RNA host gene 11). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 341.9), Adrenal (RPKM 103.0) and 2 other tissues See more
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    Genomic context

    See Snhg11 in Genome Data Viewer
    Location:
    3q42
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (167451272..167456945)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (147031367..147037043)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (154862717..154870691)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100911534 Neighboring gene small nucleolar RNA, H/ACA box 71A Neighboring gene small nucleolar RNA, H/ACA box 71C Neighboring gene small nucleolar RNA, H/ACA box 71E Neighboring gene small nucleolar RNA, H/ACA box 60 Neighboring gene Ral GTPase activating protein non-catalytic subunit beta Neighboring gene adipogenin

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Other Names

    • small nucleolar RNA host gene 11 (non-protein coding)

    Clone Names

    • MGC105739

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_172014.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      167451272..167456945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001258011.1: Suppressed sequence

      Description
      NM_001258011.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.