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    phb2.S prohibitin 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446470, updated on 18-Sep-2024

    Summary

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    Official Symbol
    phb2.S
    Official Full Name
    prohibitin 2 S homeolog
    Primary source
    Xenbase:XB-GENE-5844904
    Locus tag
    XELAEV_18036705mg
    See related
    EnsemblRapid:ENSXLAG00005022302
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    phb2; bap37; xphb2; bcap37; prohibitin2
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    Genomic context

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    See phb2.S in Genome Data Viewer
    Location:
    chromosome: 7S
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (4430003..4442613)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (4448149..4460784)

    Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene calsyntenin 3 S homeolog Neighboring gene EMG1 N1-specific pseudouridine methyltransferase S homeolog Neighboring gene protein tyrosine phosphatase non-receptor type 6 S homeolog Neighboring gene atrophin 1 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Wnt signalling regulates paxillin ubiquitination essential for mesodermal cell motility. Iioka H, et al. Nat Cell Biol, 2007 Jul. PMID 17558393
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC79025

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    prohibitin 2 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093166.1 → NP_001086635.1  prohibitin 2 S homeolog

      See identical proteins and their annotated locations for NP_001086635.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077216
      UniProtKB/TrEMBL
      A0A974CEY7, A0A974H9Z7, Q6DEB3
      Related
      ENSXLAP00005065620.1, ENSXLAT00005067137.1
      Conserved Domains (2) summary
      smart00244
      Location:39 → 201
      PHB; prohibitin homologues
      cd03401
      Location:40 → 235
      SPFH_prohibitin; Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      4430003..4442613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018226943.2 → XP_018082432.1  prohibitin 2 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974CEY7, A0A974H9Z7, Q6DEB3

    2. XM_018226942.2 → XP_018082431.1  prohibitin 2 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974CEY7, A0A974H9Z7, Q6DEB3
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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