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    stn1.S STN1, CST complex subunit S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 734784, updated on 17-Aug-2024

    Summary

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    Official Symbol
    stn1.S
    Official Full Name
    STN1, CST complex subunit S homeolog
    Primary source
    Xenbase:XB-GENE-988865
    Locus tag
    XELAEV_18036910mg
    See related
    EnsemblRapid:ENSXLAG00005011914
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    stn1; obfc1; obfc1.S
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    Genomic context

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    See stn1.S in Genome Data Viewer
    Location:
    chromosome: 7S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (17657963..17704067)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (17664581..17709198)

    Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene collagen, type XVII, alpha 1 S homeolog Neighboring gene STE20 like kinase S homeolog Neighboring gene uncharacterized LOC121396206 Neighboring gene SH3 and PX domains 2A S homeolog Neighboring gene uncharacterized LOC121396207

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Xenopus laevis Ctc1-Stn1-Ten1 (xCST) protein complex is involved in priming DNA synthesis on single-stranded DNA template in Xenopus egg extract. Nakaoka H, et al. J Biol Chem, 2012 Jan 2. PMID 22086929, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC131038

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables single-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within telomere capping IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within telomere maintenance via telomere lengthening IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CST complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    STN1, CST complex subunit S homeolog
    Names
    CST complex subunit STN1
    oligonucleotide/oligosaccharide-binding fold containing 1 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001096252.1 → NP_001089721.1  STN1, CST complex subunit S homeolog

      See identical proteins and their annotated locations for NP_001089721.1

      Status: PROVISIONAL

      Source sequence(s)
      BC106405
      UniProtKB/TrEMBL
      Q3KQ33
      Conserved Domains (2) summary
      pfam09170
      Location:87 → 261
      STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
      cl09930
      Location:34 → 85
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      17657963..17704067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041570587.1 → XP_041426521.1  STN1, CST complex subunit S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8FEH3, A0A974CB69
      Conserved Domains (2) summary
      cd04483
      Location:55 → 157
      hOBFC1_like; A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be ...
      pfam09170
      Location:159 → 332
      STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1

    2. XM_018227041.2 → XP_018082530.1  STN1, CST complex subunit S homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J0TD63, E7FLL1
      Related
      ENSXLAP00005034931.1, ENSXLAT00005035814.1

    3. XM_041570588.1 → XP_041426522.1  STN1, CST complex subunit S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8FEH3, A0A974CB69
      Related
      ENSXLAP00005034944.1, ENSXLAT00005035827.1
      Conserved Domains (2) summary
      cd04483
      Location:55 → 157
      hOBFC1_like; A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be ...
      pfam09170
      Location:159 → 332
      STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1

    4. XM_041570589.1 → XP_041426523.1  STN1, CST complex subunit S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J1LAG6
      Conserved Domains (1) summary
      cl09930
      Location:59 → 110
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

    5. XM_041570591.1 → XP_041426525.1  STN1, CST complex subunit S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A8J1LCZ3
      Conserved Domains (1) summary
      cl09930
      Location:59 → 110
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

    6. XM_041570590.1 → XP_041426524.1  STN1, CST complex subunit S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J1LAG6
      Conserved Domains (1) summary
      cl09930
      Location:59 → 110
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
    Nucleotide Protein Strain
    Heading Accession and Version

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