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    lamp2.L lysosomal-associated membrane protein 2 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 733384, updated on 18-Sep-2024

    Summary

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    Official Symbol
    lamp2.L
    Official Full Name
    lysosomal-associated membrane protein 2 L homeolog
    Primary source
    Xenbase:XB-GENE-17343433
    Locus tag
    XELAEV_18038715mg
    See related
    EnsemblRapid:ENSXLAG00005013720
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    lampb; cd107b; lamp-2
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    Genomic context

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    See lamp2.L in Genome Data Viewer
    Location:
    chromosome: 8L
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (36765963..36807277, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (23605066..23644591, complement)

    Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 255A L homeolog Neighboring gene ATPase, Na+/K+ transporting, beta 4 polypeptide L homeolog Neighboring gene protein kinase C delta type Neighboring gene uncharacterized LOC108705645 Neighboring gene uncharacterized LOC121397019

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within autophagosome maturation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular response to starvation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within establishment of protein localization to organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein targeting to lysosome involved in chaperone-mediated autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lysosome-associated membrane glycoprotein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      36765963..36807277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041572703.1 → XP_041428637.1  lysosome-associated membrane glycoprotein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8J1LGI4, Q3KPN1
      Related
      ENSXLAP00005040559.1, ENSXLAT00005041482.1
      Conserved Domains (1) summary
      pfam13316
      Location:218 → 271
      DUF4087; Protein of unknown function (DUF4087)

    2. XM_041572702.1 → XP_041428636.1  lysosome-associated membrane glycoprotein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8J1LGY5, Q3KPN1
      Related
      ENSXLAP00005040569.1, ENSXLAT00005041492.1
      Conserved Domains (1) summary
      pfam13316
      Location:219 → 272
      DUF4087; Protein of unknown function (DUF4087)

    3. XM_018229787.2 → XP_018085276.1  lysosome-associated membrane glycoprotein 2 isoform X5

      UniProtKB/TrEMBL
      A0A8J0TIC8, Q3KPN1

    4. XM_018229784.2 → XP_018085273.1  lysosome-associated membrane glycoprotein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8J0TGN0, Q3KPN1
      Related
      ENSXLAP00005040564.1, ENSXLAT00005041487.1

    5. XM_018229783.2 → XP_018085272.1  lysosome-associated membrane glycoprotein 2 isoform X2

      UniProtKB/TrEMBL
      A0A1L8F754, A0A974C6H7, Q3KPN1
      Related
      ENSXLAP00005040543.1, ENSXLAT00005041466.1
    Nucleotide Protein Strain
    Heading Accession and Version

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