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    idi1.L isopentenyl-diphosphate delta isomerase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 494671, updated on 18-Sep-2024

    Summary

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    Official Symbol
    idi1.L
    Official Full Name
    isopentenyl-diphosphate delta isomerase 1 L homeolog
    Primary source
    Xenbase:XB-GENE-866173
    Locus tag
    XELAEV_18030705mg
    See related
    EnsemblRapid:ENSXLAG00005024135
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    idi1; ipp1; ippl1
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    Genomic context

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    See idi1.L in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (17970205..17977228, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (15549711..15556480, complement)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein domain family member 4B L homeolog Neighboring gene GTP binding protein 4 L homeolog Neighboring gene WD repeat domain 37 L homeolog Neighboring gene golgin subfamily A member 6-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables isopentenyl-diphosphate delta-isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within dimethylallyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within isopentenyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    isopentenyl-diphosphate delta isomerase 1 L homeolog
    NP_001087986.1
    XP_018122109.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094517.1 → NP_001087986.1  isopentenyl-diphosphate delta isomerase 1 L homeolog

      See identical proteins and their annotated locations for NP_001087986.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082648
      UniProtKB/TrEMBL
      A0A974CLA1, Q640H7
      Conserved Domains (2) summary
      COG1443
      Location:73 → 262
      Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]
      cl00447
      Location:66 → 281
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      17970205..17977228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018266620.2 → XP_018122109.1  isopentenyl-diphosphate delta isomerase 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0VF13, A0A974CLA1
      Related
      ENSXLAP00005071493.1, ENSXLAT00005073041.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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