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    pcf11.S PCF11, cleavage and polyadenylation factor subunit S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446483, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pcf11.S
    Official Full Name
    PCF11, cleavage and polyadenylation factor subunit S homeolog
    Primary source
    Xenbase:XB-GENE-5846527
    Locus tag
    XELAEV_18016369mg
    See related
    EnsemblRapid:ENSXLAG00005000291
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    pcf11
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    Genomic context

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    See pcf11.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (162145917..162173057)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (152804261..152831257)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene prolylcarboxypeptidase S homeolog Neighboring gene RAB30, member RAS oncogene family S homeolog Neighboring gene coiled-coil domain containing 90B S homeolog Neighboring gene uncharacterized LOC108709147

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC79081

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PCF11, cleavage and polyadenylation factor subunit S homeolog; pre-mRNA cleavage complex 2 protein Pcf11
    Names
    PCF11, cleavage and polyadenylation factor subunit, homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      162145917..162173057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018250383.2 → XP_018105872.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X1

      UniProtKB/TrEMBL
      A0A1L8HB26, A0A974HWZ9
      Related
      ENSXLAP00005000789.1, ENSXLAT00005000820.1

    2. XM_018250384.2 → XP_018105873.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X2

      UniProtKB/TrEMBL
      A0A8J0UL43

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001093179.1: Suppressed sequence

      Description
      NM_001093179.1: This RefSeq was temporarily suppressed because there is insufficient transcript data, and the protein is short compared to homologs.
    Nucleotide Protein Strain
    Heading Accession and Version

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