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    pecr.S peroxisomal trans-2-enoyl-CoA reductase S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446674, updated on 17-Aug-2024

    Summary

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    Official Symbol
    pecr.S
    Official Full Name
    peroxisomal trans-2-enoyl-CoA reductase S homeolog
    Primary source
    Xenbase:XB-GENE-1009814
    Locus tag
    XELAEV_18046966mg
    See related
    EnsemblRapid:ENSXLAG00005013724
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    pecr
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    Genomic context

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    See pecr.S in Genome Data Viewer
    Location:
    chromosome: 9_10S
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (51184505..51190988, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (44534014..44540497, complement)

    Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121398866 Neighboring gene uncharacterized LOC108702903 Neighboring gene transmembrane protein 169 S homeolog Neighboring gene membrane associated ring-CH-type finger 4 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC83314

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables trans-2-enoyl-CoA reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phytol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    peroxisomal trans-2-enoyl-CoA reductase
    NP_001086839.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093370.1 → NP_001086839.1  peroxisomal trans-2-enoyl-CoA reductase

      See identical proteins and their annotated locations for NP_001086839.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077532
      UniProtKB/TrEMBL
      A0A974BUE7, Q6DDM3
      Related
      ENSXLAP00005040525.1, ENSXLAT00005041448.1
      Conserved Domains (2) summary
      PRK07677
      Location:28 → 267
      PRK07677; short chain dehydrogenase; Provisional
      cd05369
      Location:28 → 263
      TER_DECR_SDR_a; Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      51184505..51190988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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