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    lsm4.S LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 495318, updated on 18-Sep-2024

    Summary

    Official Symbol
    lsm4.S
    Official Full Name
    LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog
    Primary source
    Xenbase:XB-GENE-945540
    Locus tag
    XELAEV_18009872mg
    See related
    EnsemblRapid:ENSXLAG00005014598
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    lsm4
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

    See lsm4.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (94237477..94256154)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (88958044..88976938)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 1-like S homeolog Neighboring gene uncharacterized LOC121399373 Neighboring gene A-agglutinin anchorage subunit-like S homeolog Neighboring gene jun D proto-oncogene S homeolog Neighboring gene phosphodiesterase 4C S homeolog

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within P-body assembly IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
     
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of spliceosomal tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog
    Names
    LSM4 homolog, U6 small nuclear RNA associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094985.1NP_001088454.1  LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog

      See identical proteins and their annotated locations for NP_001088454.1

      Status: PROVISIONAL

      Source sequence(s)
      BC084779
      UniProtKB/TrEMBL
      A0A974DTL6, Q5U5A5
      Related
      ENSXLAP00005042725.1, ENSXLAT00005043792.1
      Conserved Domains (1) summary
      cd01723
      Location:277
      LSm4; Like-Sm protein 4

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      94237477..94256154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)