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    hoxa1.S homeobox A1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 397903, updated on 18-Sep-2024

    Summary

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    Official Symbol
    hoxa1.S
    Official Full Name
    homeobox A1 S homeolog
    Primary source
    Xenbase:XB-GENE-6252179
    Locus tag
    XELAEV_18033067mg
    See related
    EnsemblRapid:ENSXLAG00005003122
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    bsas; hox1f; hoxa1; xhoxa1; hoxa1-a; hoxa1-b; Hox.lab2; Xhox.lab; Xhox.lab2
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    Genomic context

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    See hoxa1.S in Genome Data Viewer
    Location:
    chromosome: 6S
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (34603676..34605813, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (33682013..33684140, complement)

    Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121395024 Neighboring gene sorting nexin 10 S homeolog Neighboring gene src kinase associated phosphoprotein 2 S homeolog Neighboring gene homeobox protein Hox-A4 Neighboring gene homeobox A2 S homeolog Neighboring gene homeobox A3 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Knockdown of the complete Hox paralogous group 1 leads to dramatic hindbrain and neural crest defects. McNulty CL, et al. Development, 2005 Jun. PMID 15930115
    2. Retinoic acid perturbs the expression of Xhox.lab genes and alters mesodermal determination in Xenopus laevis. Sive HL, et al. Genes Dev, 1991 Aug. PMID 1678362

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    homeobox protein Hox-A1
    Names
    Homeobox protein Hox-A1
    homeobox protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      34603676..34605813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018269236.2 → XP_018124725.1  homeobox protein Hox-A1

      UniProtKB/TrEMBL
      A0A1L8FRB8, A0A974HE24
      Related
      ENSXLAP00005009298.1, ENSXLAT00005009437.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08821.1 GenPept UniProtKB/Swiss-Prot:Q08821

    Gene LinkOut

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    Research Materials