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    snip1.L Smad nuclear interacting protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446681, updated on 4-Nov-2024

    Summary

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    Official Symbol
    snip1.L
    Official Full Name
    Smad nuclear interacting protein 1 L homeolog
    Primary source
    Xenbase:XB-GENE-6255657
    Locus tag
    XELAEV_18012514mg
    See related
    EnsemblRapid:ENSXLAG00005001799 AllianceGenome:Xenbase:XB-GENE-6255657
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    snip1b; snip1-a; snip1-b
    Summary
    Predicted to enable mRNA binding activity. Predicted to act upstream of or within miRNA processing. Predicted to be located in nucleus. Orthologous to human SNIP1 (Smad nuclear interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See snip1.L in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (88330624..88336167)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (82781861..82787404)

    Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene LSM10, U7 small nuclear RNA associated L homeolog Neighboring gene AFG2 interacting ribosome maturation factor L homeolog Neighboring gene E3 ubiquitin-protein ligase TRIM62 Neighboring gene MYST/Esa1-associated factor 6 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Smad nuclear interacting protein 1 L homeolog
    Names
    Smad nuclear interacting protein 1 b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093377.1 → NP_001086846.1  Smad nuclear interacting protein 1 L homeolog

      See identical proteins and their annotated locations for NP_001086846.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077541
      UniProtKB/TrEMBL
      A0A974HYG1, Q6DDL6
      Related
      ENSXLAP00005005376.1, ENSXLAT00005005482.1
      Conserved Domains (2) summary
      COG1716
      Location:252 → 358
      FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
      cd00060
      Location:235 → 350
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      88330624..88336167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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