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    adh5.L alcohol dehydrogenase 5 (class III), chi polypeptide L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 445841, updated on 18-Sep-2024

    Summary

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    Official Symbol
    adh5.L
    Official Full Name
    alcohol dehydrogenase 5 (class III), chi polypeptide L homeolog
    Primary source
    Xenbase:XB-GENE-977220
    Locus tag
    XELAEV_18005748mg
    See related
    EnsemblRapid:ENSXLAG00005010515
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    fdh; adh3; adh5; adhx; adh-3; gsnor
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    Genomic context

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    See adh5.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (79436572..79455260)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (68568218..68586929)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene NADP-dependent alcohol dehydrogenase Neighboring gene uncharacterized LOC121403107 Neighboring gene methionyl aminopeptidase 1 L homeolog Neighboring gene eukaryotic translation initiation factor 4E L homeolog Neighboring gene small Cajal body-specific RNA 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Takezaki N, et al. Mol Biol Evol, 2004 Aug. PMID 15128875
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables alcohol dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within formaldehyde catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within small molecule metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    alcohol dehydrogenase 5 (class III), chi polypeptide L homeolog
    Names
    alcohol dehydrogenase class 3
    NP_001086427.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092958.1 → NP_001086427.1  alcohol dehydrogenase 5 (class III), chi polypeptide L homeolog

      See identical proteins and their annotated locations for NP_001086427.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ575267
      UniProtKB/TrEMBL
      A0A974I356, Q4V813, Q6EE34
      Related
      ENSXLAP00005031289.1, ENSXLAT00005032054.1
      Conserved Domains (2) summary
      TIGR02818
      Location:9 → 376
      adh_III_F_hyde; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
      cd08300
      Location:8 → 375
      alcohol_DH_class_III; class III alcohol dehydrogenases

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      79436572..79455260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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